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Sequence: ^AA

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Id. PDB Type SubType ForceField Solvent Description Time (ns) Sequence
Id. PDB Type SubType ForceField Solvent Description Time (ns) Sequence
NAFlex_2lpw 2LPW Dna G-loop parmBSC1 TIP3P DNA Single Stranded Naked ParmBSC1 TIP3P Electroneutral G-Loop 5,000 AAGGGTGGGTGTAAGTGTGGGTGGGT
NAFlex_ProtDNA_1hlv 1HLV Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AATCCCGTTTCCAACGAAGGC
NAFlex_ProtDNA_2kdz 2KDZ Prot-Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AAGATAACGATATTTA
NAFlex_ProtDNA_2or1 2OR1 Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 AAGTACAAACTTTCTTGTAT
NAFlex_1hlv 1HLV Dna B parmBSC1 SPCE DNA-B Duplex Protein-Nuc ParmBSC1 SPC/E AddedSalt 1,000 AATCCCGTTTCCAACGAAGGC
NAFlex_psATT NONE Dna parallel triplex ATT parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 440 AAAAAAAAAA | TTTTTTTTTT | TTTTTTTTTT
NAFlex_apsAAT NONE Dna Anti parallel triplex AAT parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 240 AAAAAAAAAA | TTTTTTTTTT | AAAAAAAAAA